Day 2 - Dimensionality Reduction,
Coevolution, and Contact Prediction

Material 

• Slides

• Notebook - Dimensionality Reduction

• Notebook - Coevolution and Contact Prediction

Papers

• https://www.solab.org/resources/coevolution-structure-prediction

• Unified framework for modeling multivariate distributions in biological sequences

  1. https://arxiv.org/abs/1906.02598

  2. https://github.com/sokrypton/seqmodels

Python Libraries

• plot.ly - Make interactive plots in Google Colab!

• scikit-learn - machine learning library for classification, regression, clustering, dimensionality reduction, etc.

• JAX - JAX is numpy, autograd and jit compilation brought together for high-performance numerical computing.